Try going into each controller separately and deleting the codes. I find that when I choose 'Clear Codes' from the auto scan, nothing is deleted.
Alarm triggered - don't worry
Positioning motors - don't worry unless you're getting differing temperatures from the left/right vents
Doors - clear and see if they come back, my driver's door does it once in a blue moon. Maybe check the door wiring in the rubber gromet ting near the hinge.
Engine start blocked - obviously no problem now.
Key signal - low battery in remote, change it. Recode key (if needed) by unlocking car with key, put key in ignition, turn ignition on, hold unlock on remote for 5sec, ignition off, door closed and click lock on remote... always works for me.
High pressure sensor - heard about that, but no idea about it, sorry.
Internal control module - Not sure what module this is, what section of vagcom was it in? Is the part number 8E0 907 279 X? (X could be B,C,D,E or F) If so, do all your electrics work ok? Does your car have bulb warnings on the display?
Click the link to see my car, it's not so much of a 'build thread' because not enough building is going on!
http://uk-audis.net/forums/p/2137/19732.aspx#19732